From: Olivier Scalbert <olivier.scalbert@algosyn.com>
Subject: Re: Ada Shootout program for K-Nucleotide (patches)
Date: Thu, 03 Sep 2009 15:44:41 +0200
Date: 2009-09-03T15:44:41+02:00 [thread overview]
Message-ID: <4a9fc85a$0$2850$ba620e4c@news.skynet.be> (raw)
In-Reply-To: <4a757b0d$0$31328$9b4e6d93@newsspool4.arcor-online.net>
Georg Bauhaus wrote:
> jonathan wrote:
>> I forgot to add I used:
>>
>> gnatmake -gnatnp -O3 -funroll-all-loops -march=native knucleotide
>>
>> with a running time of (usually) 7.25 sec on the 25Meg data file:
>>
>> time ./knucleotide < fasta25.dat
>
> Thanks for running the program, glad to hear how they work.
>
> Meanwhile I have a tasking version which runs a little (25%)
> faster. The two new changes are
>
> 1 - make 3 additional tasks call Write; round robin
>
> 2 - order the results using a protected Printer object
> with entry families. Heck, these entry families have clever
> features! :-)
>
>
> http://home.arcor.de/bauhaus/Ada/knucleotide.tasking.gnat
Hi,
Same result for me !
One question:
I have tried to profile knucleotide, so I have recompile it after
removing all the inlines and optimization:
gnatmake -gnatNp -march=native -g -pg -f knucleotide.adb -o
knucleotide.gnat_run
After running it with the 25M file, I have:
$ gprof ./knucleotide.gnat_run -b
Flat profile:
Each sample counts as 0.01 seconds.
% cumulative self self total
time seconds seconds calls s/call s/call name
100.00 19.30 19.30 1 19.30 19.30 _ada_knucleotide
0.00 19.30 0.00 1 0.00 0.00 adainit
Call graph
granularity: each sample hit covers 4 byte(s) for 0.05% of 19.30 seconds
index % time self children called name
<spontaneous>
[1] 100.0 0.00 19.30 main [1]
19.30 0.00 1/1 _ada_knucleotide [2]
0.00 0.00 1/1 adainit [3]
-----------------------------------------------
279444692 _ada_knucleotide [2]
19.30 0.00 1/1 main [1]
[2] 100.0 19.30 0.00 1+279444692 _ada_knucleotide [2]
279444692 _ada_knucleotide [2]
-----------------------------------------------
0.00 0.00 1/1 main [1]
[3] 0.0 0.00 0.00 1 adainit [3]
-----------------------------------------------
Index by function name
[2] _ada_knucleotide [3] adainit
Why I do not see all the different functions and procedures ? Should I
miss something ?
Thanks,
Olivier
next prev parent reply other threads:[~2009-09-03 13:44 UTC|newest]
Thread overview: 116+ messages / expand[flat|nested] mbox.gz Atom feed top
2009-08-01 12:21 Ada Shootout program for K-Nucleotide (patches) Georg Bauhaus
2009-08-01 12:59 ` Ludovic Brenta
2009-08-01 13:59 ` Georg Bauhaus
2009-08-01 13:50 ` Gautier write-only
2009-08-01 15:21 ` Ludovic Brenta
2009-08-01 15:37 ` Gautier write-only
2009-08-02 12:55 ` Georg Bauhaus
2009-08-27 11:17 ` Ole-Hjalmar Kristensen
2009-08-27 12:25 ` Georg Bauhaus
2009-09-01 8:06 ` Ole-Hjalmar Kristensen
2009-09-01 9:29 ` Georg Bauhaus
2009-09-01 10:48 ` Ole-Hjalmar Kristensen
2009-09-01 10:16 ` Ole-Hjalmar Kristensen
2009-09-01 11:34 ` Georg Bauhaus
2009-09-01 12:11 ` Ole-Hjalmar Kristensen
2009-09-01 14:36 ` Georg Bauhaus
2009-09-03 8:49 ` Ole-Hjalmar Kristensen
2009-09-02 8:44 ` Georg Bauhaus
2009-09-02 11:07 ` Ole-Hjalmar Kristensen
2009-09-03 8:13 ` Ole-Hjalmar Kristensen
2009-09-03 10:39 ` Georg Bauhaus
2009-08-03 8:56 ` Jacob Sparre Andersen
2009-08-03 11:43 ` Georg Bauhaus
2009-08-03 12:36 ` Jacob Sparre Andersen
2009-08-03 18:31 ` Isaac Gouy
2009-08-03 20:29 ` Robert A Duff
2009-08-04 15:43 ` Isaac Gouy
2009-08-04 16:06 ` Isaac Gouy
2009-08-04 17:08 ` Georg Bauhaus
2009-08-05 15:58 ` Isaac Gouy
2009-08-05 21:18 ` Georg Bauhaus
2009-08-05 22:04 ` Ludovic Brenta
2009-08-05 22:31 ` Georg Bauhaus
2009-08-05 23:44 ` Jeffrey R. Carter
2009-08-06 8:38 ` Georg Bauhaus
2009-08-06 21:39 ` Georg Bauhaus
2009-08-06 22:42 ` Jeffrey R. Carter
2009-08-07 8:53 ` Georg Bauhaus
2009-08-07 9:21 ` Jacob Sparre Andersen
2009-08-07 9:23 ` Jacob Sparre Andersen
2009-08-09 19:17 ` Georg Bauhaus
2009-08-13 20:56 ` jonathan
2009-08-13 21:30 ` jonathan
2009-08-13 22:08 ` Georg Bauhaus
2009-08-14 15:31 ` jonathan
2009-08-06 7:51 ` Dmitry A. Kazakov
2009-08-06 0:07 ` Isaac Gouy
2009-08-06 8:36 ` Georg Bauhaus
2009-08-06 9:09 ` Dmitry A. Kazakov
2009-08-06 10:34 ` Georg Bauhaus
2009-08-06 10:49 ` Dmitry A. Kazakov
2009-08-06 15:21 ` Isaac Gouy
2009-08-03 20:47 ` Ludovic Brenta
2009-08-01 17:07 ` jonathan
2009-08-01 17:59 ` jonathan
2009-08-02 11:39 ` Georg Bauhaus
2009-08-02 16:00 ` jonathan
2009-08-02 16:42 ` jonathan
2009-09-03 13:44 ` Olivier Scalbert [this message]
2009-09-03 14:08 ` Ludovic Brenta
2009-09-03 15:13 ` Olivier Scalbert
2009-09-03 19:11 ` sjw
2009-09-04 6:11 ` Olivier Scalbert
2009-09-04 8:18 ` Ludovic Brenta
2009-09-04 10:17 ` Olivier Scalbert
2009-09-04 12:37 ` Ludovic Brenta
2009-09-04 13:50 ` Olivier Scalbert
2009-09-04 12:50 ` Ludovic Brenta
2009-09-04 16:22 ` Georg Bauhaus
2009-09-04 16:29 ` Georg Bauhaus
2009-09-04 16:38 ` Ludovic Brenta
2009-09-04 17:58 ` Georg Bauhaus
2009-09-04 18:12 ` Georg Bauhaus
2009-09-05 20:16 ` Georg Bauhaus
2009-09-07 7:45 ` Olivier Scalbert
2009-09-07 9:19 ` Georg Bauhaus
2009-09-07 13:31 ` Olivier Scalbert
2009-09-07 14:38 ` jonathan
2009-09-07 15:03 ` Olivier Scalbert
2009-09-07 17:31 ` jonathan
2009-09-07 17:54 ` Olivier Scalbert
2009-09-07 18:07 ` Georg Bauhaus
2009-09-08 0:22 ` Georg Bauhaus
2009-09-04 17:56 ` Martin
2009-09-04 18:26 ` Georg Bauhaus
2009-09-04 21:51 ` Robert A Duff
2009-09-04 18:51 ` Ludovic Brenta
2009-09-04 9:27 ` Georg Bauhaus
2009-09-03 15:28 ` Georg Bauhaus
2009-09-04 1:24 ` Georg Bauhaus
2009-08-04 8:23 ` Martin
2009-08-16 15:20 ` jonathan
2009-08-17 15:46 ` Georg Bauhaus
2009-08-18 16:59 ` jonathan
2009-08-19 14:52 ` Georg Bauhaus
2009-08-19 16:40 ` Martin
2009-08-19 18:24 ` Robert A Duff
2009-08-19 22:15 ` jonathan
2009-08-19 23:50 ` Georg Bauhaus
2009-08-20 19:47 ` jonathan
2009-08-20 22:15 ` Georg Bauhaus
2009-08-21 21:43 ` jonathan
2009-08-22 22:35 ` Georg Bauhaus
2009-08-23 22:21 ` jonathan
2009-08-20 19:55 ` jonathan
2009-08-19 21:37 ` Georg Bauhaus
2009-08-19 19:22 ` jonathan
2009-08-19 19:27 ` jonathan
2009-08-27 9:05 ` Martin
2009-08-27 9:08 ` Martin
2009-08-27 10:01 ` Georg Bauhaus
2009-10-07 11:44 ` Olivier Scalbert
2009-10-07 12:04 ` Georg Bauhaus
2009-10-07 13:22 ` Martin
2009-10-07 14:15 ` Olivier Scalbert
2009-10-08 9:54 ` Georg Bauhaus
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